The NeighborNet tree clearly illustrates the problems at the two major nexus points. It shows the data do not allow a clear delineation of Drosera regia, Drosera arcturi, Aldrovanda vesiculosa, and Dionaea muscipula at the Droseraceae radiation. And again it favors Aldrovanda closer to Drosera regia and Drosera arcturi than to Dionaea. This is not totally unexpected because there is evidence each of those species evolved their signature attributes independently. Aldrovanda appears to have evolved snap traps independently of Dionaea: the traps of Aldrovanda close using a hinge-like mechanism while the traps of Dionaea close by modifying the curvature of the leaf. While Drosera regia has many attributes that ally it with the core Drosera it does have a few traits more like those of Dionaea than the rest of the Drosera genus. In fact we have no idea what any of these species looked like 65 million years ago or when each key character evolved.
More DNA data may help us to understand the Droseraceae radiation but maybe not. The figure to the right is a network of the combined rbcL and matK sequences for the species where we have adequate data. Basically it says the same thing. The most likely explanation for the difficulty is when Drosera regia, Drosera arcturi and the other Drosera, Aldrovanda vesiculosa, and Dionaea muscipula diverged the crucial period of time may be a small fraction of the time period since then. If all five proto-species in the Droseraceae radiation diverged within, say, a million years and this happened 70 million years ago there will be very few diagnostic loci and we may not be able to distinguish diagnostic loci from noise.
The out-of-Australia nexus also shows a lot of what could be considered unresolved connections. This nexus may suffer from some of the same issues as the initial Droseraceae radiation—the key events happened over a short period of time a long time ago. However in this case it is not as long ago and we have more species with sequence data and many more species, subspecies, and forms that could be sequenced. Working with the data we have, removing Drosera uniflora from the analysis removes much of the network between Drosera stenopetala / Drosera uniflora and Drosera neocaledonica. Something curious is going on there but what? It makes me wonder if Drosera has low level chloroplast transfer in pollen. However it is more likely that with more data Drosera uniflora may link in more closely with another species closer to the branch point. But which species? It may no longer be around. On the South America / Africa branch we see that what I have labeled "Drosera spatulata (1)" sits right in this branch point and it networks curiously to Drosera capensis. I would sure like to know more about the source plant for that sequence.
It is important to note the data used to make the trees are chloroplast lineages. Chloroplasts are essentially intracellular cyanobacteria symbionts. Their genetics is much simpler which makes the data cleaner and thus easier to analyze and interpret. This chloroplast sequences also changes more slowly than most nuclear sequences and at a rate that is good for this level of study.
If there is a hybridization event, the chloroplasts will generally come from the female parent. For instance we know that Drosera tokaiensis resulted from a cross between the diploid (2x) Drosera rotundifolia and a tetraploid (4x) Drosera spatulata. This gave a mostly sterile triploid (3x) which after rare chromosome doubling resulted in a fertile hexaploid (6x) Drosera tokaiensis with the Drosera spatulata chloroplasts. Something similar probably happened to make the tetraploid (4x) Drosera spatulata found in Asia. I suspect a diploid (2x) Drosera spatulata hybridized with a diploid (2x) species currently identified as "Drosera spatulata" but not or a now extinct species which after chromosome doubling resulted in the tetraploid (4x) "Drosera spatulata" with Drosera spatulata chloroplasts. Another example of this is the hybridization between Drosera rotundifolia and Drosera linearis to produce Drosera anglica. At this point it is not clear whether Drosera anglica got its chloroplasts from Drosera rotundifolia and the event happened long ago or whether it has Drosera linearis chloroplasts. There is no published Drosera linearis chloroplast sequence.
| What is a problem for the phylogeny is multiple chloroplast lineages in a species. If populations of a species have been isolated long enough the chloroplast profiles in each population will evolve independently. This is because new chloroplast lineages are founded by mutations all the time. There is generally no mixing or recombination of lineages in individuals because of the exclusive maternal inheritance. Through random sampling or selection, different lineages can come to dominate in separate populations of the same species. Hybridization between interfertile species can also inject new chloroplast lineages into the mix. This can make things "interesting" and some of our conclusions wrong. Unfortunately at this point we do not know how common these exceptions are. |
How can we determine both parents of a hybridization event? With the chloroplast sequence data we can determine the probable female parent of the hybrid if it happened relatively recently. If the hybridization event happened multiple times we should be able to find some plants with chloroplasts from one parent and other plants with chloroplasts of the other parent. That is of course if the hybridization works both ways which is not always the case.
Another way to look at hybridization events is to compare nuclear DNA sequences. A common sequence to use is the DNA sequence for ribosomal RNAs and the "spacer" sequences between them. In the case for Drosera tokaiensis, Hoshi et al. (2008) found the nuclear sequences to be the same as Drosera rotundifolia. Curiously they did not find any sequences that matched Drosera spatulata. However they did find sequences that do not match any published sequence. It is unclear at this point whether they found evidence of gene silencing or if there were DNA isolation and sequencing issues. Either way they did confirm that Drosera tokaiensis is of hybrid origin and the parents were Drosera spatulata as the seed parent and Drosera rotundifolia as the pollen parent for the samples tested.
This Drosera story is a work in progress. We may never know or understand all the twists and turns but as we get more data more of the story will become less opaque.
-- John Brittnacher
For a more detailed discussion please see the following articles and articles they reference.
Rivadavia, Fernando, Katsuhiko Kondo, Masahiro Kato, and Mitsuyasu Hasebe (2003) Phylogeny of the sundews, Drosera (Droseraceae) based on chloroplast rbcL and nuclear 18S ribosomal DNA sequences. American Journal of Botany 90(1): 123-130.
Bryant, Drosera , and V. Moulton. (2004) NeighborNet: an agglomerative algorithm for the construction of planar phylogenetic networks. Mol. Biol. Evol. 21:255–265.
Nakano, M., E. Kinoshita and K. Ueda. (2004) Life history traits and coexistence of an amphidiploid, Drosera tokaiensis, and its parental species, Drosera rotundifolia and Drosera spatulata (Droseraceae). Plant Species Biology 19(2):59–72.
Snyder, Ivan (2003) Curious Natural Hybrid Sundews. Carniv. Pl. Newslett. 32(2):52-56. (
)
Snyder, Ivan (2000) Colchicine Treatment on Sterile Hybrid sundews. Carniv. Pl. Newslett. 29(1):4-10. (
)
Poppinga, Simon and Marc Joyeux (2011) Different mechanics of snap-trapping in the two closely related carnivorous plants Dionaea muscipula and Aldrovanda vesiculosa. Physical Review E 84, 041928.
The NCBI sequences used in this analysis are from:
Rivadavia, Fernando, Katsuhiko Kondo, Masahiro Kato, and Mitsuyasu Hasebe (2003) Phylogeny of the sundews, Drosera (Droseraceae) based on chloroplast rbcL and nuclear 18S ribosomal DNA sequences. American Journal of Botany 90(1): 123-130.
Hoshi, Y., Shirakawa, J., Hasebe, M., Fukushima, K., and Kondo, K. (2008). Tandem repeat rDNA sequence derived from parents were stably maintained in hexaploids of Drosera spathulata complex (Droseraceae). Cytologia 73: 313-325.
Ichihashi,Y. and Minami,M.
Chubu University, Japan
Unpublished data
Albert,V. A., Williams,S.E. and Chase,M. W.
Lebanon
Valley College, PA,
USA
Science 257 (5076), 1491-1495 (1992)
Cameron,K. M., Wurdack,K. J. and Jobson,R. W.
The New York
Botanical Garden, NY, USA
Am. J. Bot. 89 (9), 1503-1509 (2002)
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NeighborNet network for combined chloroplast rbcL and matK data sets. The data are from NCBI, aligned by clustalw-2.0.10, and analyzed and drawn by the SplitsTree4 program. The combined data sets do not help resolve the initial Droseraceae radiation.

Associations between 18S rRNA,
ITS1, 5.8S rRNA, ITS2 and 28S rRNA sequences in NCBI database. The tree data were generated by NCBI Blast and graphed with PHYLIP drawtree. This tree is based on shorter sequences than the NeighborNet network below.
The lines marked and  are species of apparent hybrid origin. It is not known if the different sequences result from legitimate or illegitimate recombination events or laboratory errors.

None of the bifurcating phylogeny trees, including NeighborNet, can actually represent the true nature of the Drosera phylogeny. We do not know how many species are the result of hybridization that did not result in a change in chromosome number. However we do know which species are allopolyploids. In allopolyploids the genomes of two species are combined but the chloroplast lines are not. The South American and African Drosera derived from a plant similar to Drosera spatulata are all allopolyploids, usually allotetraploids. Drosera spatulata in Japan may be from the same source but is more likely a separate polyploidization event. Drosera neocaledonica, Drosera tokaiensis, and Drosera anglica are all independently derived allopolyploids. As in the case with Drosera tokaiensis you can see that allopolyploids are not necessarily derived from very closely related species. |
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